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The Pathologist / Issues / 2025 / November / Whole-Genome Sequencing Assay Detects HPV / Notecards
Infectious Disease Liquid biopsy Omics Research and Innovations Molecular Pathology

Whole-Genome Sequencing Assay Detects HPV

HPV-DeepSeek identifies circulating HPV DNA, PIK3CA mutations, and integration events in pretreatment blood samples with high sensitivity and specificity.

By Jim Gallagher 11/28/2025 News 3 min read
article Full Article Summary Notecard

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  1. HPV-DeepSeek assay shows 98.7 percent sensitivity, 99.1 percent specificity.

  2. Targets 43 HPV genotypes, crucial for early cancer detection.

  3. Study involved 224 patients with HPV-associated squamous cell carcinoma.

  4. High median genome coverage near 100 percent in true-positive cases.

  5. Reports PIK3CA mutations and viral integration patterns.

  6. Observations align with established cancer-site-specific tendencies.

  7. Potential applications in treatment monitoring and assessing residual disease.

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About the Author(s)

Jim Gallagher

Senior Managing Editor, Conexiant

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