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The Pathologist / Issues / 2025 / December / Beyond the Biopsy
Biochemistry and molecular biology Liquid biopsy Precision medicine Technology and innovation

Beyond the Biopsy

Merging spatial and systemic biomarkers for precision medicine

By Shana Tetrault 12/02/2025 Review 4 min read

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Credit: Quanterix

The precision medicine landscape is rapidly evolving, driven by technologies that reveal disease biology with unprecedented resolution – transforming how clinicians diagnose and personalize treatments. It’s not just about identifying the presence of disease, but understanding its biological context – where it originates, how it evolves, and when it can be intercepted.

In proteomics, two complementary platforms are leading this shift: spatial proteomics, which allows the visualization of protein expression within intact tissue architecture; and ultra-sensitive blood-based protein quantification. Together, these technologies bring multidimensional granularity to translational research and clinical diagnostics.

Spatial proteomics captures the microenvironmental context in which disease develops, offering a detailed snapshot at a single moment in time. In contrast, liquid biomarkers deliver continuous visibility into disease dynamics, but lack information about the tissue of origin. When integrated, these approaches create a powerful synergy, connecting spatial signatures at baseline with longitudinal biomarker patterns, over the course of therapeutic intervention.

This integration is particularly valuable in oncology, immunotherapy, and autoimmune research, where understanding both the tissue context and systemic response is crucial for guiding treatment decisions.

Credit: Quanterix

Enhancing confidence through reproducibility

Discovery biology thrives on novelty, but clinical diagnostics rely on consistency. If results cannot be reproduced across laboratories, regulators and clinicians will lack confidence in their reliability. Spatial proteomic data and ultra-sensitive biomarker assays must generate consistent results across labs, timepoints, and patient cohorts to support therapeutic decisions.

To enhance standardization and data reliability, researchers are adopting pre-developed, validated protein panels with harmonized antibodies, locked-down protocols, and unified analysis pipelines across laboratories. This standardization minimizes inter-lab variability, reduces batch and user errors, and ensures reproducible data collection. Reproducibility is the bridge from academic discovery to clinical trust. Automated systems and integrated analysis software further align segmentation and fluorescence detection, enabling high-plex tissue readouts suitable for multicenter studies and diagnostic workflows.

Ultra-sensitive blood-based biomarker assays are widely used in research to ensure consistent, high-quality results under rigorous standards.  For example, Phospho-tau assays, including pTau 205 and pTau 212, are key biomarkers for early and progressive stages of Alzheimer’s disease. With controlled antibody pairing, they deliver reproducible, longitudinal biomarker data across clinical and translational sites, advancing reliable neurodegenerative disease research.

Streamlining integration into clinical workflows

Although spatial proteomics and high-sensitivity assays can seem complex, recent advancements have lowered barriers to clinical adoption by improving workflow efficiency, enhancing data interpretability, and implementing cost controls, making integration more feasible.

New spatial proteomics platforms offer streamlined staining protocols, automation, and pre-validated antibody panels to accelerate tissue analysis. Through this optimization, testing turnaround times are being reduced from days to hours, enabling compatibility with clinical pathology workflows.

Pathologists need quantifiable, reproducible scores to inform reports. AI-driven analysis software now delivers spatial metrics such as immune cell density, cellular co-localization, and tumor margin infiltration, that can be reported alongside standard histopathology. Extracting meaningful insights quicker allows clinical teams to make more accurate and informed decisions – supporting optimal patient outcomes.

When adopting new technology in clinical settings, cost and operational feasibility are key considerations. By adopting a tiered diagnostic strategy – beginning with spatial proteomics at baseline and followed by continuous blood-based biomarker monitoring – clinical teams can reduce the need for repeated biopsies, shorten turnaround times, and manage costs more effectively, especially in resource-limited settings.

Credit: Quanterix

A future built on integration

Far from narrowing the role of the pathologist, these integrated tools expand it. Pathologists are no longer confined to reporting morphology or static IHC scores; they are positioned to interpret multidimensional spatial proteomic data and correlate it with systemic biomarkers. Their expertise remains central to interpreting the biological narrative encoded within each biopsy.

The integration of tissue and fluid biomarker data reinforces pathologists’ leadership in molecular diagnostics, enabling them to provide deeper, more actionable insights to oncologists, neurologists, and the broader care team.

The goal of combining the diagnostic potential of spatial biology and ultra-sensitive protein detection is to help match patients with optimal therapies, reduce invasive tests, and improve outcomes by tracking disease in real time.

For patients, this shift means fewer invasive procedures, faster course corrections, and treatment plans that adapt to their biology in real time. Diagnostics have evolved from reactive snapshots to proactive, precision-guided pathways — uniting the “where” with the “when,” moving us from detection to understanding — improving both quality of care and quality of life.

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About the Author(s)

Shana Tetrault

Shana Tetrault, PhD, is Senior Director of Product Marketing, Quanterix.

More Articles by Shana Tetrault

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